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Title: | Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package | Authors: | Griffiths, Emma J Timme, Ruth E Mendes, Catarina Inês Page, Andrew J Alikhan, Nabil-Fareed Fornika, Dan Maguire, Finlay Campos, Josefina Park, Daniel Olawoye, Idowu B Oluniyi, Paul E Anderson, Dominique Christoffels, Alan da Silva, Anders Gonçalves Cameron, Rhiannon Dooley, Damion Katz, Lee S Black, Allison Karsch-Mizrachi, Ilene Barrett, Tanya Johnston, Anjanette Connor, Thomas R Nicholls, Samuel M Witney, Adam A Tyson, Gregory H Tausch, Simon H Raphenya, Amogelang R Alcock, Brian Aanensen, David M Hodcroft, Emma Hsiao, William W L Vasconcelos, Ana Tereza R MacCannell, Duncan R |
Keywords: | COVID-19;Biologia Computacional;Metadados;Genómica | Issue Date: | 2022 | Journal: | GigaScience | Abstract: | The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is actively working to establish consensus standards, document and share best practices, improve the availability of critical bioinformatics tools and resources, and advocate for greater openness, interoperability, accessibility, and reproducibility in public health microbial bioinformatics. In the face of the current pandemic, PHA4GE has identified a need for a fit-for-purpose, open-source SARS-CoV-2 contextual data standard. |
Description: | Fil: Griffiths, Emma J. Faculty of Health Sciences, Simon Fraser University; Canada Fil: Timme, Ruth E. Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park; USA Fil: Mendes, Catarina Inês. Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa; Portugal Fil: Page, Andrew J. Microbes in the Food Chain, Quadram Institute Bioscience, Norwich; United Kingdom Fil: Alikhan, Nabil-Fareed. Microbes in the Food Chain, Quadram Institute Bioscience, Norwich United Kingdom Fil: Fornika, Dan. BC Centre for Disease Control Public Health Laboratory, Vancouver; Canada Fil: Campos, Josefina. ANLIS Dr.C.G.Malbrán. Instituto Nacional de Enfermedades Infecciosas; Argentina Fil: Park, Daniel. Infectious Disease and Microbiome Program, The Broad Institute of MIT and Harvard, Cambridge; USA Fil: Olawoye, Idowu B. African Center of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede; Nigeria Fil: Oluniyi, Paul E. Department of Biological Sciences, College of Natural Sciences, Redeemer's University, Ede; Nigeria Fil: Anderson, Dominique. South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape; South Africa Fil: Christoffels, Alan. South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape ;South Africa Fil: Gonçalves da Silva, Anders. Microbiological Diagnostic Unit Public Health Laboratory, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne; Australia Fil: Cameron, Rhiannon. Faculty of Health Sciences, Simon Fraser University; Canada Fil: Dooley, Damion. Faculty of Health Sciences, Simon Fraser University; Canada Fil: Katz, Lee S. Center for Food Safety, University of Georgia, Atlanta; USA Fil: Black, Allison. Department of Epidemiology, University of Washington; USA Fil: Karsch-Mizrachi, Ilene. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda; USA Fil: Barrett, Tanya. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda; USA Fil: Johnston, Anjanette. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda; USA Fil: Connor, Thomas R. Organisms and Environment Division, School of Biosciences, Cardiff University; United Kingdom Fil: Nicholls, Samuel M. University of Birmingham; United Kingdom Fil: Witney, Adam A. Institute for Infection and Immunity, St George's, University of London; United Kingdom Fil: Tyson, Gregory H. Center for Veterinary Medicine, U.S. Food and Drug Administration; USA Fil: Tausch, Simon H. Department of Biological Safety, German Federal Institute for Risk Assessment; Germany Fil: Raphenya, Amogelang R. Department of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Canada Fil: Alcock, Brian. Department of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Canada Fil: Aanensen, David M. Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus; United Kingdom Fil: Hodcroft, Emma. Biozentrum, University of Basel; Switzerland Fil: Hsiao, William W L. Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver; Canada Fil: Vasconcelos, Ana Tereza R. Bioinformatics Laboratory National Laboratory of Scientific Computation LNCC/MCTI; Brazil Fil: MacCannell, Duncan R. Office of Advanced Molecular Detection, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention; USA |
URI: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847733/ http://sgc.anlis.gob.ar/handle/123456789/2433 |
DOI: | 10.1093/gigascience/giac003 |
Appears in Collections: | Publicaciones INEI |
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giac003.pdf | Artículo en inglés | 2.27 MB | Adobe PDF | View/Open |
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